Archive for the ‘MySQL 8’ Category
Express.js & MySQL
Sometimes, you just half to chuckle. A couple folks felt that I didn’t give enough information in my post showing how to configure a small Node.js application that could access a MySQL database. Specifically, they wanted me to explain the following:
- Configure your Express.js and MySQL development in a single Node.js application.
- How to convert the list of
RowDataPacket
objects as elements of data, which is really just simple JavaScript knowledge. - How to bind variables into the query.
Like the other blog post, this one assumes you’ve performed a global install of Node.js on a Linux server. If you’re unfamiliar with how to perform a global Node.js installation, I cover how to do it in this earlier blog post.
Before you write the Node.js applicaiton, you need to setup a db
developer directory. A global install of Node.js means you need to create a node_modules
symbolic link to the /usr/local/lib/node_modules
directory in the db
directory (in Linux). You can use the following Linux command from within the db
directory to create the appropriate symbolic link:
ln -s /usr/local/lib/node_modules `pwd`/node_modules |
or, assuming you have a /home/some_user/db directory
ln -s /usr/local/lib/node_modules /home/some_user/node_modules |
After creating the node_modules
symbolic link, you need to run the following two npm
commands. Please note that second command holds the secret-sauce for generating a package.json
file that supports Express.js and the MySQL driver:
npm init --y sudo npm install --save express mysql |
Then, you need to replace the package.json
file with the contents of the package-lock.json
file from your last npm
command.
Here’s a small sample program that uses Express.js, converts the RowDataPackets
collection, and binds local variables into the query:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | // Require libraries. const express = require('express') const mysql = require('mysql') // Create a mysql connection. const connection = mysql.createConnection({ host: 'localhost', user: 'student', password: 'student', database: 'studentdb' }) // Declare two local variables. const start_date = '2001-01-01' const end_date = '2003-12-31' // Connect and display results in the console log. connection.connect((err) => { if (err) throw err else { console.log('Connected to MySQL Server!\n') connection.query("SELECT i.item_title " + ", date_format(i.release_date,'%d-%M-%Y') AS release_date " + "FROM item i JOIN common_lookup cl " + "ON i.item_type = cl.common_lookup_id " + "WHERE cl.common_lookup_type = 'BLU-RAY' " + "AND i.release_date BETWEEN ? AND ? " + "ORDER BY i.release_date" ,[start_date, end_date], function (err, result) { if (err) throw err else { // Prints the index value in the RowDataPacket. for(let element in result) { console.log(result[element].item_title + ', ' + result[element].release_date) } console.log('') console.log('Press Ctrl-C to terminate ...') } }) } }) |
Line 28 shows two question marks. They act as placeholders for binding variables. Then, on line 30 you see a collection of the start_date
and end_date
local variables, which is the second argument to the query()
function.
Rather than define individual variables, you can pass them as a collection directly. For example, you replace lines 14 and 15 with this single line:
14 | const dates = ['2001-01-01','2003-12-31'] |
Then, you can pass dates
as the second argument to the query()
function, like this:
30 | ,dates, function (err, result) { |
Lines 35 and 36 show you how to convert a collection of RowDataPacket
objects into elements of data. The for
loop assigns the index value to the element
variable, which lets you address a single RowDataPacket
object instance. The dot (“.
“) notation lets you use the name in a name-value pair to reference its value.
It displays the following:
Connected to MySQL Server! Star Wars II, 16-May-2002 Harry Potter and the Chamber of Secrets, 28-May-2002 Harry Potter and the Sorcerer's Stone, 28-May-2002 Die Another Day, 03-June-2003 Press Ctrl-C to terminate ... |
Naturally, I’ll get around to writing something up that shows how to leverage MySQL data into a dynamic form with Handlebars at some point in the near future.
As always, I hope this helps those looking for a solution.
Node.js & MySQL
These are my notes for creating a small Node.js application that queries a MySQL database. The post will show you how to:
- Configure your Node.js development directory.
- Build a small application to test a MySQL connection.
- Build a small application that connects to the MySQL database and queries data.
This blog post assumes you’ve performed a global install of Node.js on a Linux server. If you’re unfamiliar with how to perform a global Node.js installation, I cover how to do it in this earlier blog post.
Before you write the Node.js applicaiton, you need to setup a db
developer directory. Then, create a node_modules
symbolic link to the /usr/local/lib/node_modules
directory in the db
directory. You can use the following command from the db
directory:
ln -s /usr/local/lib/node_modules `pwd`/node_modules |
After creating the node_modules
symbolic link, you need to run the following two npm
commands:
npm init --y npm install --save mysql |
The first command sets up a generic package.json
file, and the second adds the mysql
package and supporting packages to the package.json
file. These two steps configure the Node.js side of these examples.
They both require that you create the student
user with a native password, like so:
CREATE USER 'student'@'localhost' IDENTIFIED WITH 'mysql_native_password' BY 'student'; GRANT ALL PRIVILEGES ON studentdb.* TO 'student'@'localhost'; FLUSH PRIVILEGES; |
The following example shows you how to check a connection to the MySQL database:
const mysql = require('mysql') const connection = mysql.createConnection({ host: 'localhost', user: 'student', password: 'student', database: 'studentdb' }) connection.connect((err) => { if (err) throw err else console.log('Connected to MySQL Server!\n') console.log('User configured wiht mysql_native_password.\n'); console.log('Press Ctrl-C to terminate ...') }) |
You extend the previous example by adding a query component and returning the query result
value to the console’s log (leveraging the w3school’s Node.js and MySQL tutorial example):
const mysql = require('mysql') const connection = mysql.createConnection({ host: 'localhost', user: 'student', password: 'student', database: 'studentdb' }) connection.connect((err) => { if (err) throw err else { console.log('Connected to MySQL Server!\n') connection.query('SELECT DISTINCT item_title FROM item', function (err, result) { if (err) throw err else console.log(result) console.log('Press Ctrl-C to terminate ...') }) } }) |
It should display the following:
Connected to MySQL Server! [ RowDataPacket { item_title: 'The Hunt for Red October' }, RowDataPacket { item_title: 'Star Wars I' }, RowDataPacket { item_title: 'Star Wars II' }, RowDataPacket { item_title: 'Star Wars III' }, RowDataPacket { item_title: 'The Chronicles of Narnia' }, RowDataPacket { item_title: 'RoboCop' }, RowDataPacket { item_title: 'Pirates of the Caribbean' }, RowDataPacket { item_title: 'MarioKart' }, RowDataPacket { item_title: 'Splinter Cell' }, RowDataPacket { item_title: 'Need for Speed' }, RowDataPacket { item_title: 'The DaVinci Code' }, RowDataPacket { item_title: 'Cars' }, RowDataPacket { item_title: 'Beau Geste' }, RowDataPacket { item_title: 'I Remember Mama' }, RowDataPacket { item_title: 'Tora! Tora! Tora!' }, RowDataPacket { item_title: 'A Man for All Seasons' }, RowDataPacket { item_title: 'Hook' }, RowDataPacket { item_title: 'Around the World in 80 Days' }, RowDataPacket { item_title: 'Harry Potter and the Sorcerer\'s Stone' }, RowDataPacket { item_title: 'Camelot' }, RowDataPacket { item_title: 'Casino Royale' }, RowDataPacket { item_title: 'Die Another Day' }, RowDataPacket { item_title: 'Golden Eye' }, RowDataPacket { item_title: 'Tomorrow Never Dies' }, RowDataPacket { item_title: 'The World Is Not Enough' }, RowDataPacket { item_title: 'Brave Heart' }, RowDataPacket { item_title: 'Christmas Carol' }, RowDataPacket { item_title: 'Scrooge' }, RowDataPacket { item_title: 'Clear and Present Danger' }, RowDataPacket { item_title: 'Harry Potter and the Chamber of Secrets' }, RowDataPacket { item_title: 'Harry Potter and the Prisoner of Azkaban' }, RowDataPacket { item_title: 'Harry Potter and the Goblet of Fire' }, RowDataPacket { item_title: 'Harry Potter and the Order of the Phoenix' }, RowDataPacket { item_title: 'Harry Potter and the Half Blood Prince' }, RowDataPacket { item_title: 'Harry Potter and the Deathly Hallows, Part 1' }, RowDataPacket { item_title: 'Harry Potter and the Deathly Hallows, Part 2' }, RowDataPacket { item_title: 'Tron' }, RowDataPacket { item_title: 'The Avengers' }, RowDataPacket { item_title: 'Thor: The Dark World' } ] Press Ctrl-C to terminate ... |
As always, I hope this helps those looking to learn
MySQL 8.0.20 JDBC
In April, when I updated from MySQL 8.0.17 to MySQL 8.0.19, I found that my Java connection example failed. That’s because of a change in the JDBC driver, which I blogged about then. Starting yesterday, I began updating a base Fedora 30 configuration again to MySQL 8.0.20. I wrote a testing program for the Java JDBC file last time, and when I ran it this time it told me that I didn’t have the JDBC driver installed, or in the $CLASSPATH
. My Java diagnostic script, MySQLDriver.java
, returned the following error message:
Error: Could not find or load main class MySQLDriver |
The Java JDBC test program code is in the prior post. It simply loads the user, password, database, host, and port statically for my student image, which you can update for your MySQL deployment.
You can find the MySQL 8.0 Connector/J installation in Chapter 4 of the MySQL Connector/J 8.0 Developer Guide. The link to page where you can download the Connector/J driver is in Chapter 4, but to save time you can click on the following download link. You’ll find Ubuntu, Debian, SUSE Enterprise Linux Server, Red Hat Enterprise Linux/Oracle Linux, Fedora, Platform Independent, and Source Code at that download link.
I downloaded Fedora 30, 31, and 32 because eventually they get deprecated and sometimes I need the deprecated versions. Since Python 2.7 is deprecated, keeping an old Fedora 30 with both Python 2.7 and 3.7 is very attractive as a developer, keeping these Java libraries is also a potential convenience. On the Fedora 30 platform, you should download:
mysql-connector-java-8.0.20-1.fc30.noarch.rpm |
You install the RPM package with the following syntax:
rpm -ivh mysql-connector-java-8.0.20-1.fc30.noarch.rpm |
It installs a single mysql-connector-java.jar
file in the /usr/share/java
directory. Then, you need to export the Java Archive file like so in your .bashrc
file:
# Set the Java CLASSPATH path. export CLASSPATH=/usr/share/java/mysql-connector-java.jar:. |
Now, my MySQLDriver Java program returned:
Cannot connect to database server: The server time zone value 'MDT' is unrecognized or represents more than one time zone. You must configure either the server or JDBC driver (via the 'serverTimezone' configuration property) to use a more specifc time zone value if you want to utilize time zone support. |
As qualified in the prior post, it required me to add the following line to my /etc/my.cnf
configuration file, which synchronizes the database’s timezone with the operating system.
# Synchronize the MySQL clock with the computer system clock. default-time-zone='+00:00' |
You need to restart the MySQL Daemon to apply the change, like:
sudo systemctl restart mysqld.service |
Then, running my MySQL Driver connection test program worked like a charm. It returns the following:
Database connection established MySQLDriver Version [8.0.20] Database connection terminated |
As always, I hope this helps those looking for a quick solution.
MySQL 8.0.20 Update
After I updated a Fedora 30 instance, I could no longer connect to the MySQL database. An attempt to connect raised the following error:
Error: Can't connect to local MySQL server through socket '/var/lib/mysql/mysql.sock' (2) |
My guess was correct, the mysqld.service
got removed during the update (a synonym for upgrade). So, I ran the following command as a sudoer user:
sudo systemctl enable mysqld.service |
It creates the following symbolic link:
Created symlink /etc/systemd/system/multi-user.target.wants/mysqld.service → /usr/lib/systemd/system/mysqld.service. |
That would start the MySQL Daemon (mysqld
) on the next restart of the OS. However, I didn’t want to restart to have access to the service. I simply started it with the following command:
sudo systemctl start mysqld.service |
Then, I could connect to the MySQL database. As always, I hope this helps those looking for a solution.
MySQL Linux to Windows
My students want to transfer their course setup MySQL files from the Linux VM that I provide to Microsoft Windows 10. This post explains how because I found a couple small errors in the Google’d posts they would most likely see.
The first step is required because when I didn’t assign a name or domain to the the Fedora VM, which allows it to run as localhost on any student machine. In tandem, I didn’t assign a static IP address but opted for dynamic IP assignment. That means, the first step to securely copy the files requires you to find the assigned IP address. You can do that with the following Linux command:
ifconfig -a | grep 'inet[[:blank:]]' | head -1 | cut -c 14-30 |
It would return something like:
192.168.147.198 |
After you have discovered the IP address, you need to download PuTTy from their web site because includes the pscp (PuTTy Secure Copy) utility. I recommend you click on the MSI (Microsoft Installer Package) file, and install it on your Windows machine. As a rule, you should accept the default location, which is C:\Program Files\PuTTy
.
While you could alter your system-level %PATH%
environment variable after you install the software, I recommend you only include it in the %PATH%
within the scope of a Command (cmd
) shell. Navigate to your Windows Start and enter cmd
in the search field. It should launch the Command Prompt terminal, which is a terminal emulator.
In the terminal editor, type the following case sensitive command to add the PuTTy directory to your path (yes, it’s case sensitive):
SET PATH=%PATH%;%ProgramFiles%\PuTTy |
Now, you can securely copy the files and directory structure from Linux to Windows with the following command (where you replace the traditional server name with the dynamically assigned IP address). You should also be in the target directory where you want the files and directories copied:
C:\Data\cit225>pscp -r student@192.168.147.198:/home/student/Data/cit225/mysql . |
After entering the password for the student on the Linux VM, you should see the following copy over:
Raiders2.png | 99 kB | 99.5 kB/s | ETA: 00:00:00 | 100% LordOfTheRings3.png | 119 kB | 119.8 kB/s | ETA: 00:00:00 | 100% HarryPotter4.png | 103 kB | 103.9 kB/s | ETA: 00:00:00 | 100% Raiders1.png | 92 kB | 92.4 kB/s | ETA: 00:00:00 | 100% Raiders3.png | 123 kB | 123.9 kB/s | ETA: 00:00:00 | 100% LordOfTheRings2.png | 111 kB | 111.7 kB/s | ETA: 00:00:00 | 100% LordOfTheRings1.png | 103 kB | 104.0 kB/s | ETA: 00:00:00 | 100% HarryPotter2.png | 118 kB | 118.7 kB/s | ETA: 00:00:00 | 100% HarryPotter7.png | 150 kB | 150.2 kB/s | ETA: 00:00:00 | 100% HarryPotter3.png | 106 kB | 106.1 kB/s | ETA: 00:00:00 | 100% HarryPotter5.png | 82 kB | 82.5 kB/s | ETA: 00:00:00 | 100% HarryPotter6.png | 129 kB | 129.9 kB/s | ETA: 00:00:00 | 100% HarryPotter1.png | 118 kB | 118.8 kB/s | ETA: 00:00:00 | 100% HarryPotter8.png | 150 kB | 150.9 kB/s | ETA: 00:00:00 | 100% HarryPotter8.txt | 8 kB | 8.5 kB/s | ETA: 00:00:00 | 100% HarryPotter3.txt | 5 kB | 5.8 kB/s | ETA: 00:00:00 | 100% HarryPotter5.txt | 7 kB | 7.9 kB/s | ETA: 00:00:00 | 100% HarryPotter1.txt | 6 kB | 6.6 kB/s | ETA: 00:00:00 | 100% HarryPotter2.txt | 7 kB | 7.8 kB/s | ETA: 00:00:00 | 100% Raiders3.txt | 5 kB | 5.6 kB/s | ETA: 00:00:00 | 100% HarryPotter4.txt | 7 kB | 7.5 kB/s | ETA: 00:00:00 | 100% HarryPotter7.txt | 5 kB | 5.4 kB/s | ETA: 00:00:00 | 100% HarryPotter6.txt | 7 kB | 7.4 kB/s | ETA: 00:00:00 | 100% LOTRFellowship.txt | 4 kB | 5.0 kB/s | ETA: 00:00:00 | 100% apply_store_base.sql | 1 kB | 1.6 kB/s | ETA: 00:00:00 | 100% query_membership.sql | 0 kB | 0.3 kB/s | ETA: 00:00:00 | 100% apply_mysql_lab1.sql | 1 kB | 1.9 kB/s | ETA: 00:00:00 | 100% configure_mysql_web.sql | 37 kB | 37.1 kB/s | ETA: 00:00:00 | 100% seed_mysql_store_ri2.sql | 58 kB | 58.5 kB/s | ETA: 00:00:00 | 100% cleanup_mysql_store.sql | 5 kB | 5.4 kB/s | ETA: 00:00:00 | 100% create_mysql_store_ri2.sq | 21 kB | 21.1 kB/s | ETA: 00:00:00 | 100% |
My students will need to repeat this step to transfer all of the sample PHP files that demonstrate web application patterns. They also need to inspect individual files to ensure any path referencing commands are manually converted to their new Windows equivalent.
They can move the physical files as the root
superuser with the following pscp
command provide you haven’t stored the files somewhere other than the default location:
C:\Data\temp>pscp -r root@192.168.147.198:/var/lib/mysql . |
As always, I hope this helps those trying to sort things out.
Java & MySQL 8.0.19
It’s the in-between term time and we’re all stuck at home. I decided to update the image for my Fedora 30 virtual machine. I had a work around to the update issue that I had encountered last October in Bug #96969 but it was not required with the current version. However, after updating from MySQL 8.0.17 to MySQL 8.0.19, I found that my Java connection example failed.
The $CLASSPATH
value was correct:
/usr/share/java/mysql-connector-java.jar:. |
The first error that I got was the my reference to MySQL JDBC driver was incorrect. The error message is quite clear:
Loading class `com.mysql.jdbc.Driver'. This is deprecated. The new driver class is `com.mysql.cj.jdbc.Driver'. The driver is automatically registered via the SPI and manual loading of the driver class is generally unnecessary. Cannot connect to database server: The server time zone value 'MDT' is unrecognized or represents more than one time zone. You must configure either the server or JDBC driver (via the 'serverTimezone' configuration property) to use a more specifc time zone value if you want to utilize time zone support. |
I changed the MySQL Driver reference as instructed by the error message:
29 30 31 | // Create instance of MySQLDriver. Class.forName ("com.mysql.cj.jdbc.Driver").newInstance(); conn = DriverManager.getConnection (url, username, password); |
After the change, I got the following error while retesting my little MySQL Java driver connection test program. Initially, I thought this required a change in the Java environment but that wasn’t it.
Cannot connect to database server: The server time zone value 'MDT' is unrecognized or represents more than one time zone. You must configure either the server or JDBC driver (via the 'serverTimezone' configuration property) to use a more specifc time zone value if you want to utilize time zone support. |
It required me to add the following line to my /etc/my.cnf configuration file, which synchronizes the database’s timezone with the operating system.
# Synchronize the MySQL clock with the computer system clock. default-time-zone='+00:00' |
Then, running my MySQL Driver connection test program worked like a charm. It returns the following:
Database connection established MySQLDriver Version [8.0.19] Database connection terminated |
Here’s the MySQL Connector Java code if you’d like to use the MySQLDriver.java
file:
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 | // Import classes. import java.sql.*; /* You can't include the following on Linux without raising an exception. */ // import com.mysql.jdbc.Driver; public class MySQLDriver { public MySQLDriver() { /* Declare variables that require explicit assignments because they're addressed in the finally block. */ Connection conn = null; Statement stmt = null; ResultSet rset = null; /* Declare other variables. */ String url; String username = "student"; String password = "student"; String database = "studentdb"; String hostname = "localhost"; String port = "3306"; String sql; /* Attempt a connection. */ try { // Set URL. url = "jdbc:mysql://" + hostname + ":" + port + "/" + database; // Create instance of MySQLDriver. Class.forName ("com.mysql.cj.jdbc.Driver").newInstance(); conn = DriverManager.getConnection (url, username, password); // Query the version of the database. sql = "SELECT version()"; stmt = conn.createStatement(); rset = stmt.executeQuery(sql); System.out.println ("Database connection established"); // Read row returns for one column. while (rset.next()) { System.out.println("MySQLDriver Version [" + rset.getString(1) + "]"); } } catch (SQLException e) { System.err.println ("Cannot connect to database server:"); System.out.println(e.getMessage()); } catch (ClassNotFoundException e) { System.err.println ("Cannot find MySQL driver class:"); System.out.println(e.getMessage()); } catch (InstantiationException e) { System.err.println ("Cannot instantiate class:"); System.out.println(e.getMessage()); } catch (IllegalAccessException e) { System.err.println ("Illegal access exception:"); System.out.println(e.getMessage()); } finally { if (conn != null) { try { rset.close(); stmt.close(); conn.close(); System.out.println ("Database connection terminated"); } catch (Exception e) { /* ignore close errors */ } } } } /* Unit test. */ public static void main(String args[]) { new MySQLDriver(); } } |
As always, I hope this helps those who encounter similar problems.
Session Variables
In MySQL and Oracle, you set a session variable quite differently. That means you should expect there differences between setting a session variable in Postgres. This blog post lets you see how to set them in all three databases. I’m always curious what people think but I’m willing to bet that MySQL is the simplest approach. Postgres is a bit more complex because you must use a function call, but Oracle is the most complex.
The difference between MySQL and Postgres is an “@
” symbol versus a current_setting()
function call. Oracle is more complex because it involves the mechanics in Oracle’s sqlplus
shell, SQL dialect, and PL/SQL language (required to assign a value to a variable).
MySQL
MySQL lets you declare a session variable in one step and use it one way in a SQL statement or stored procedure.
- You set a session variable on a single line with the following command:
SET @my_variable_name := 'My Value';
- You can query a variable from the pseudo table
dual
or as a comparison value in theSELECT
-listSELECT @my_variable_name AS "The Value" FROM dual;
or
WHERE
clauseSELECT column_name FROM table_name WHERE column_name = @my_variable_name;
Postgres
Postgres lets you declare a session variable in one step and use it one way in a SQL statement or stored procedure.
- You set a session variable in a single line. It iss critical to note that you must use double quotes around the session variable name and single quotes for the value. You raise an error when you use a single quote instead a double quote around the session variable name. The syntax is:
SET SESSION "videodb.table_name" = 'new_hire';
- You can query a variable from the pseudo table
dual
or as a comparison value in theSELECT
-list with thecurrent_setting()
function call.SELECT current_setting('videodb.table_name') AS "The Value";
or
WHERE
clauseSELECT column_name FROM table_name WHERE column_name = current_setting('videodb.table_name');
Oracle
There are two steps required to declare a session variable in Oracle. First, you need to define the variable in the SQL*Plus session. Oracle lets you define a variable like you would define a variable in the C language, using extern
before the variable’s type. Second, you assign a value to the session variable in an anonymous PL/SQL block. There is no single line statement to declare a variable with an initial value.
- You set a session variable by using the
VARIABLE
keyword, a variable name, and data type. The supported data types are:BLOB
,BFILE
,BINARY_DOUBLE
,BINARY_FLOAT
,CHAR
,CLOB
,NCHAR
,NCLOB
,NVARCHAR2
,REFCURSOR
, andVARCHAAR2
. You define a variable with the following syntax:VARIABLE bv_variable_name VARCHAR2(30)
- You assign a value to the bind variable inside an anonymous block by prefacing the variable name with a colon. You assign values inside PL/SQL with the walrus operator (
:=
) and a string enclosed by single quotes. Anonymous blocks start with aBEGIN
and end with anEND
followed by a semicolon (;
) and a forward slash (/
) to dispatch the block for execution. The following example shows a full block:BEGIN :bv_variable_name := 'Some Value'; END; /
- You can query any declared variable from the pseudo table
dual
or as a comparison value in theSELECT
-listSELECT :bv_variable_name FROM dual;
or
WHERE
clauseSELECT column_name FROM table_name WHERE column_name = :bv_variable_name;
pgAdmin4 on Fedora 30
While attempting an install of pgAdmin and updating a Fedora 30 environment, I encountered a conflict on the upgrade of MySQL 8.0.17-1 to 8.0.17.2. The community-mysql-8.0.17-2.fc30.x86_64
had conflicts with:
mysql-community-client-8.0.17-1.fc30.x86_64
packagemysql-community-server-8.0.17-1.fc30.x86_64
package
I tried to update the system before install pgadmin4
with the following syntax:
dnf -y update && dnf -y install pgadmin4 |
The dnf
utility raise the following MySQL package errors during transaction checking:
Display detailed console log →
Error: Transaction check error: file /usr/bin/mysql conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysql_config_editor conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqladmin conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlbinlog conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlcheck conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqldump conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlimport conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlpump conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlshow conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/mysqlslap conflicts between attempted installs of community-mysql-8.0.17-2.fc30.x86_64 and mysql-community-client-8.0.17-1.fc30.x86_64 file /usr/bin/ibd2sdi conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/innochecksum conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/my_print_defaults conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/myisam_ftdump conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/myisamchk conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/myisamlog conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/myisampack conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/mysql_secure_installation conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/mysql_ssl_rsa_setup conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/mysql_tzinfo_to_sql conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/mysql_upgrade conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/mysqld_pre_systemd conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/bin/perror conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib/systemd/system/mysqld.service conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib/systemd/system/mysqld@.service conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/adt_null.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/auth_socket.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/component_audit_api_message_emit.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/component_log_filter_dragnet.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/component_log_sink_json.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/component_log_sink_syseventlog.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/component_validate_password.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/connection_control.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/ddl_rewriter.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/group_replication.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/ha_example.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/ha_mock.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/innodb_engine.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/keyring_file.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/keyring_udf.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/libmemcached.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/locking_service.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/mypluglib.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/mysql_clone.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/mysql_no_login.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/rewrite_example.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/rewriter.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/semisync_master.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/semisync_slave.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/validate_password.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/plugin/version_token.so conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/sbin/mysqld conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /var/lib/mysql conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /var/lib/mysql-keyring conflicts between attempted installs of community-mysql-server-8.0.17-2.fc30.x86_64 and mysql-community-server-8.0.17-1.fc30.x86_64 file /usr/lib64/mysql/libmysqlclient.so.21.1.17 conflicts between attempted installs of community-mysql-libs-8.0.17-2.fc30.x86_64 and mysql-community-libs-8.0.17-1.fc30.x86_64 |
Since I’m not sure what’s wrong or how to fix it, I’ve put it in my queue of things to get to later. However, when I figure it out I’ll update this blog page with the solution or work around. If anybody knows the fix and would like to share, please let me know.
I removed the pending update packages with the following command:
dnf clean packages |
Then, I simply installed pgadmin4
with the following command:
dnf -y install pgadmin4 |
Display detailed console log →
The pgadmin4
configuration instructions can be found for several Linux versions at Josphat Mutai’s Computing for Geeks web page. On Fedora 30, you need to do the following:
- Install, start, and enable Apache as the
httpd
service unless you already have done that. - Copy the
/etc/httpd/conf.d/pgadmin4.conf.sample
file to/etc/httpd/conf.d/pgadmin4.conf
, which is a new file. - Restart the
httpd
service to incorporate thepgadmin4
configuration file.
After that, you create the following new directories as the root
or sudo
user:
/var/lib/pgadmin4
/var/log/pgadmin4
You can make both directories with a single mkdir
command, like:
mkdir -p /var/lib/pgadmin4 /var/log/pgadmin4 |
As the root
or sudo
user, change the ownership of these two directories to the apache
user with the following syntax:
chown -R apache:apache /var/lib/pgadmin4 /var/log/pgadmin4 |
You add the following four statements to the config_distro.py
file in the /usr/lib/python3.7/site-packages/pgadmin4-web
directory as the root
or sudo
user:
LOG_FILE = '/var/log/pgadmin4/pgadmin4.log' SQLITE_PATH = '/var/lib/pgadmin4/pgadmin4.db' SESSION_DB_PATH = '/var/lib/pgadmin4/sessions' STORAGE_DIR = '/var/lib/pgadmin4/storage' |
You need to setup the pgadmin user with the following python3 command:
python3 /usr/lib/python3.7/site-packages/pgadmin4-web/setup.py |
Enter the following values, a real email address and a password twice:
NOTE: Configuring authentication for SERVER mode. Enter the email address and password to use for the initial pgAdmin user account: Email address: admin@example.com Password: your_password Retype password: your_password pgAdmin 4 - Application Initialisation ====================================== |
Assuming you have an enabled firewall, you need to issue the following two commands as the root
or sudo
user:
rirewall-cmd --permanent --add-service=http firewall-cmd --reload |
You invoke pgAdmin4 from within a browser window with the following URL for a stand alone workstation (for a workstation on a DNS network you would enter pgadmin.domain.domain_type
in lieu of localhost):
pgadmin/localhost/pgadmin4 |
You most likely will encounter an Internal Server Error, the recommended fix is reputed to be:
ausearch -c 'httpd' --raw | audit2allow -M my-httpd semodule -X 300 -i my-httpd.pp |
It didn’t work for me. At the end of the process, I have an Internal Server Error. It is something that I’ll try to fix next. The actual error message:
Internal Server Error The server encountered an internal error or misconfiguration and was unable to complete your request. Please contact the server administrator at root@localhost to inform them of the time this error occurred, and the actions you performed just before this error. More information about this error may be available in the server error log. |
If somebody figures out the last step before I do, that’s great. Let me and everybody else know the mystery.
On a positive note, the pgadmin4 package provided the psycopg2
library. I had looked for it as a psycopg2
package but it is in python3-psycopg2
package.
mysqli Strict Standards
Six years ago I wrote a common lookup post to illustrate the effectiveness of things used throughout your applications. Now, I’m updating my student image with a more complete solution to show how to avoid update anomalies.
In the prior post, I used a while
loop in PHP, like the following:
do { ... } while($stmt->next_result()); |
Using PHP Version 7.3.8 and MySQL 8.0.16, that now raises the following error message:
Strict Standards: mysqli_stmt::next_result(): There is no next result set. Please, call mysqli_stmt_more_results()/mysqli_stmt::more_results() to check whether to call this function/method in /var/www/html/app/library.inc on line 81 |
You can see this type of error when you set the following parameters in your file during testing:
ini_set('display_errors',1); ini_set('display_startup_errors',1); error_reporting(E_ALL); |
You can read more about error handling at this web page. The new and strict compliance standard for mysqli
managing rows is:
do { ... } while($stmt->more_result()); |
As always, I hope this helps those looking for an answer.
MySQL Update in mysqli
Somebody didn’t like the MySQLi Update Query example on the tutorialspoint.com website because it use the procedure mysqli_query
style. Here’s a simple example of using the object-oriented method version. More or less, instead of query it uses the more intuitive execute()
method.
The update_member
function contains the logic and below it is a call to the test the function. It relies on a MySQLCredentials.inc
file that contains the hostname, user name, password, and database name. You can create create member
table, like my example in MySQL 8, or any other table in your MySQL database.
<?php /* || Function Name: update_member */ function update_member($account_number, $member_type, $credit_card_number, $credit_card_type) { // Include the credentials file if omitted. include_once("MySQLCredentials.inc"); // Assign credentials to connection. $mysqli = new mysqli(HOSTNAME, USERNAME, PASSWORD, DATABASE); // Check for connection error and print message. if ($mysqli->connect_errno) { print $mysqli->connect_error."<br />"; print "Connection not established ...<br />"; } else { // Initial statement. $stmt = $mysqli->stmt_init(); /* Disabling auto commit when you want two or more statements executed as a set. || ------------------------------------------------------------ || You would add the following command to disable the default || of auto commit. || ------------------------------ || $mysqli->autocommit(FALSE); || ------------------------------------------------------------ */ // Declare a static query. $sql = "UPDATE member\n" . "SET member_type = ?\n" . ", credit_card_number = ?\n" . ", credit_card_type = ?\n" . "WHERE account_number = ?\n"; /* Prepare statement. || ------------------------------------------------------------ || Please note that the bind_param method is a position || rather than named notation, which means you must provide || the variables in the same order as they are found in || the defined $sql variable as "?". || ------------------------------------------------------------ || print($sql); || print("Member Type: [1][".$member_type."]\n"); || print("Credit Card No: [2][".$credit_card_number."]\n"); || print("Credit Card Type: [3][".$credit_card_type."]\n"); || print("Account Number: [4][".$account_number."]\n"); || ------------------------------------------------------------ */ if ($stmt->prepare($sql)) { $stmt->bind_param("ssss",$member_type,$credit_card_number,$credit_card_type,$account_number); } // Attempt query and exit with failure before processing. if (!$stmt->execute()) { // Print failure to resolve query message. print $mysqli->error."<br />"; print "Failed to resolve query ...<br />"; } else { /* Manually commiting writes when you have disabled the || default auto commit setting, explained above. || ------------------------------------------------------------ || You would add the following command to commit the || transaction. || ------------------------------ || $mysqli->commit(); || ------------------------------------------------------------ */ } } } // Test case update_member('US00011', '1006', '6011-0000-0000-0078', '1007'); ?> |
I put this logic in a function.php file. If you do the same, you can run the test case like this from the command line:
php function.sql |
As always, I hope this helps.